Butternut squash apple bake is the kind of side dish that instantly makes a meal feel like fall. With tender squash, warm cinnamon, sweet apples, and hints of vanilla and brown sugar, this bake brings the comfort of a crisp autumn afternoon straight to your table. Whether you’re making it for Thanksgiving, a potluck, or just a cozy weeknight dinner, it’s a dish that smells like home and tastes like tradition.
Fall Comfort in Every Bite of Butternut Squash Apple Bake
The recipe that saved a holiday dinner
A few years back, I volunteered to host my first holiday dinner. I had everything planned—turkey, mashed potatoes, cranberry sauce—but forgot one big thing: a vegetable side dish. About an hour before guests arrived, I realized my mistake. I rifled through the pantry and fridge, spotting a butternut squash, a couple of apples, and some cinnamon.
With no time to panic, I chopped, stirred, and tossed everything together in a dish, added a few pecans for crunch, and popped it into the oven. What came out was golden, bubbling, and smelled like a cinnamon-scented candle. That last-minute dish—now my butternut squash apple bake—was the first thing to disappear from the table.
Since then, I’ve made this recipe every year, often with guests asking for it again before dessert even hits the table.
A sweet and savory balance that works every time
What makes this dish so appealing is its balance. The butternut squash offers creamy texture and earthy sweetness. Apples add natural sugar and just a little bite. Cinnamon and vanilla make it aromatic, while raisins and dried cranberries bring chewiness and tang. Toasted pecans round it all out with warmth and crunch.
Unlike overly sweet casseroles, this butternut squash apple bake doesn’t drown in sugar or syrup. It’s gently sweet, spiced just enough, and still feels wholesome. The butter melts into the layers, coating everything in flavor. Serve it warm, straight from the oven, and it’s everything a fall side dish should be: simple, cozy, and deeply satisfying.
How to Prep the Perfect Butternut Squash Apple Bake
Picking the right apples and squash
The heart of this recipe lies in the contrast between soft, sweet apples and the creamy texture of roasted squash. For apples, go with a sweet variety like Gala, Fuji, or Honeycrisp. They hold up during baking without turning to mush. If you prefer a softer apple, something like a McIntosh adds a more tender bite—but be aware it may break down faster in the oven.
As for the butternut squash, choose one that’s firm and heavy for its size. You’ll need about 1½ pounds, peeled, seeded, and diced small. Even cubes are key. They help everything cook evenly and allow the flavors to meld together in every spoonful. If peeling a squash feels like a chore, many stores offer pre-cut options in the produce section. It’s a time-saver and just as tasty.
This dish also welcomes swaps. You can use acorn squash if butternut isn’t available. Just make sure to cut it small enough so it cooks in time. Even the apples can change—just avoid anything overly tart like Granny Smith, unless you enjoy a sharper bite.
Boosting flavor with spices, nuts, and more
This isn’t just squash and apples tossed into a pan—it’s a layered experience of warm fall spices, toasted nuts, and naturally sweet mix-ins. Start by tossing the apples and squash with cinnamon, vanilla, and brown sugar. These basics do most of the flavor work. The brown sugar caramelizes in the oven, creating a rich coating without overwhelming the dish.
A little salt and black pepper might seem unexpected in a sweet bake, but they keep the sweetness from becoming one-note. They add just enough depth to bring out the natural flavors in the fruit and squash.
Butter is essential here. Dotting it over the top before baking helps everything roast evenly and adds a silky texture. After 15 minutes in the oven, tossing in raisins, cranberries, and chopped pecans brings texture and contrast. The raisins plump, the cranberries add tang, and the pecans turn toasty and fragrant.
It’s the mix of textures—soft, chewy, crisp—that makes this butternut squash apple bake such a standout dish.

Butternut Squash Apple Bake
Ingredients
- 1 1/2 pounds peeled seeded, and small cubed butternut squash {about 2 cups, cubed evenly}
- ▢2 gala apples peeled, cored and diced {or a sweet apple of your choice}
- ▢1 tablespoon cinnamon
- ▢1 teaspoon vanilla
- ▢2 tablespoons brown sugar {or use honey}
- ▢2 tablespoon butter chopped into sections
- ▢1/2 teaspoon salt
- ▢1/8 teaspoon black pepper
- ▢1/4 cup raisins
- ▢1/4 cup pecans {or walnuts}
- ▢1/4 cup dried cranberries
Instructions
- Preheat oven to 400 degrees.
- In a large bowl combine butternut squash, apples, cinnamon, vanilla and brown sugar. Mix well.
- Add the salt and pepper and mix well.
- In a baking dish that has a lid pour the butternut squash mixture and spread evenly.
- Place chopped butter throughout the butternut squash mixture. Cover and bake for 15 minutes.
- Add the raisins, cranberries and pecans and use tongs or a spoon to toss everything together, cover and place the dish back in the oven for 15 more minutes, until the butternut squash is tender and lightly browned.
- Remove from oven and stir. Serve warm.
Notes
You can use honey in place of the brown sugar.
You can substitute acorn squash in this recipe for the butternut squash if you want.
You can use Macintosh or any other baking apples instead of gala.
To make in the crockpot:
Add all of the ingredients into a crockpot and cook on high for approximately 90 minutes to 2 hours or low for about 3 hours {check occasionally for the squash to become tender}
Nutrition
Calories: 198kcal, Carbohydrates: 36g, Protein: 2g, Fat: 7g, Saturated Fat: 3g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 3g, Trans Fat: 0.2g, Cholesterol: 10mg, Sodium: 232mg, Potassium: 547mg, Fiber: 6g, Sugar: 17g, Vitamin A: 12210IU, Vitamin C: 27mg, Calcium: 81mg, Iron: 1mg
Baking the Butternut Squash Apple Bake Just Right
Oven or crockpot? Choose your method
The classic method for preparing butternut squash apple bake is in the oven. It brings out the best texture, allowing the squash to roast and caramelize slightly while the apples soften and mingle with the warm spices. You’ll bake it at 400°F (204°C) for a total of 30 minutes, split into two stages. The first 15 minutes allow the squash and apples to begin softening under a lid. Then, after adding the raisins, cranberries, and nuts, it bakes uncovered for another 15 minutes to develop flavor and texture.
But if you’re short on oven space—especially during the holidays—the crockpot version works beautifully. Add all ingredients to your slow cooker and cook on high for 90 minutes to 2 hours, or low for 3 hours. Stir occasionally, and check for doneness toward the end. The slow cooker version produces a softer texture, almost like a warm compote, which many people love as a cozy side on colder days.
Both versions are flavorful and easy. The oven gives you more caramelization. The crockpot delivers convenience. Either way, the result is a comforting dish that tastes like autumn in every bite.
Tips for tender squash and perfect texture
To get your butternut squash tender without overcooking, cut it into small, uniform cubes—no larger than ¾-inch. Uneven chunks lead to uneven cooking. Some pieces will be too soft before others are done.
Stirring halfway through is also key, especially after adding your dried fruit and nuts. It ensures even heat distribution and helps coat everything in the melted butter and spices. Be careful not to overbake, or the squash may become mushy.
Want your dish to be slightly crispy on top? Remove the lid for the final few minutes and let the top layer caramelize. You can even switch on the broiler briefly—just watch it closely. This adds a golden finish and extra depth.
Texture can make or break a side dish. When your butternut squash apple bake is fork-tender with a balance of soft squash, juicy apples, chewy raisins, and crunchy pecans, you know it’s just right.
Serving Butternut Squash Apple Bake All Season Long
A perfect holiday side—or weeknight favorite
While this dish often shines on holiday tables, butternut squash apple bake isn’t just for Thanksgiving or Christmas. It fits right in at Sunday dinners, potlucks, or casual fall meals. The sweet and savory combo plays beautifully with roasted meats like chicken, pork, or turkey. It’s also a lovely addition to a vegetarian spread.
Serve it warm, straight from the oven or crockpot. The aroma alone makes people stop and ask, “What’s cooking?” A sprinkle of extra pecans or a drizzle of honey on top can make it feel even more special. Want to turn it into a light lunch? Add a spoonful over mixed greens and drizzle with a bit of balsamic vinaigrette for a sweet-savory salad that’s anything but boring.
Whether plated alongside mashed potatoes and stuffing or tucked into a weekday dinner, this dish adds color, texture, and warmth to any meal.
How to adapt it for different times of year
Fall may be the season most associated with squash and apples, but this dish transitions easily throughout the year. In early winter, use dried cherries instead of cranberries or stir in chopped dates for a deeper sweetness. In spring, swap the butternut squash for sweet potatoes or carrots for a brighter touch.
Want it a little less sweet? Use fewer raisins and skip the brown sugar. Prefer more crunch? Toast the nuts before adding them. This butternut squash apple bake is easy to customize based on what you have on hand—and what your crowd prefers.
Because of its versatility and comfort-food appeal, it’s the kind of side dish you’ll find yourself reaching for long after the leaves have fallen.

Frequently Asked Questions About Butternut Squash Apple Bake
1. Can I make butternut squash apple bake ahead of time?
Yes, you can prep this dish in advance. Assemble everything in the baking dish, cover, and refrigerate for up to 24 hours. When ready, bake as directed. You may need to add 5–10 minutes to the cook time if baking straight from the fridge.
2. What can I use instead of pecans?
You can substitute pecans with walnuts, almonds, or even sunflower seeds for a nut-free version. Each option brings a different crunch, so pick what fits your taste or dietary needs.
3. Is butternut squash apple bake gluten-free?
Yes, this dish is naturally gluten-free, as long as none of the packaged ingredients (like dried cranberries) contain additives with gluten. Always check labels to be safe.
4. Can I freeze leftovers of butternut squash apple bake?
Absolutely. Store cooled leftovers in an airtight container and freeze for up to 2 months. Thaw overnight in the fridge and reheat gently in the oven or microwave before serving.
Conclusion: A Fall Side Dish That Feels Like a Hug
Butternut squash apple bake is more than just a seasonal side—it’s a cozy, colorful dish that brings together the best of autumn flavors in one warm pan. Whether you’re serving it at a holiday feast or just want something simple and comforting for dinner, this recipe offers flexibility, sweetness, and just the right touch of spice.
With its balance of soft squash, juicy apples, chewy fruit, and crunchy nuts, it’s satisfying on every level. And the best part? It’s easy to make and hard to mess up. That’s the kind of recipe we all need more of.